AI Drug Discovery for Pharma and Biotech

Drug discovery

31

drugs

With orphan designations

Overview

Glycogen storage disease due to acid maltase deficiency (Pompe disease) is an autosomal recessive lysosomal disorder caused by deficient acid α-glucosidase (GAA) activity, leading to pathological glycogen accumulation in cardiac, skeletal, and respiratory muscles. The clinical spectrum ranges from severe infantile-onset disease with hypertrophic cardiomyopathy and respiratory failure to late-onset forms presenting with progressive proximal myopathy and respiratory insufficiency without cardiac involvement [1][2][5]. Diagnostic confirmation requires GAA enzyme assay and genetic testing of GAA mutations [2][14].

Population

  • Prevalence: ~1:40,000 in the U.S., with ethnic variability [2][10]

  • Infantile-onset (≤12 months) accounts for 19% of cases; late-onset (>1 year) predominates [5][14]

  • Carrier frequency: 1:100-1:300 in some populations [2][14]

Burden

  • Infantile-onset: Mortality <1 year without ERT; 83% 5-year survival with early treatment [2][10]

  • Late-onset: Progressive disability with 30% requiring wheelchair/ventilator within 15 years of diagnosis [5][14]

  • Economic impact: Annual ERT costs exceed $300,000 per patient, plus multidisciplinary care expenses [10][14]

Therapies

  • Enzyme replacement therapy (ERT):

  • Alglucosidase alfa (Myozyme®/Lumizyme®) improves survival in infantile-onset disease and delays progression in late-onset forms [3][9]

  • Next-generation ERT (avalglucosidase alfa, cipaglucosidase alfa + miglustat) shows non-inferior efficacy with enhanced cellular uptake [3][9]

  • Supportive care: Respiratory support (non-invasive ventilation), physical therapy, and cardiac monitoring [10][12]

  • Investigational approaches: Gene therapy and substrate reduction therapy in clinical trials [3][11]

Categories: rare cardiac diseases, rare genetic diseases, rare inborn errors of metabolism, rare neurological diseases, rare transplant-related disorders

Research Papers

1,226 drug discovery papers related to Glycogen storage disease due to acid maltase deficiency, with 4 first-in-class and 20 next-in-class early-stage therapies forecasted to outperform the average preclinical success rate. Recent publications:

1,226 drug discovery papers related to Glycogen storage disease due to acid maltase deficiency, with 4 first-in-class and 20 next-in-class early-stage therapies forecasted to outperform the average preclinical success rate. Recent publications:

2026-06-12 | TRPML1 agonists synergize with enzyme replacement therapy in fibroblasts from Pompe disease patients.

Pompe disease is a severe and progressive metabolic myopathy caused by pathogenic variants of the GAA gene, deficiency of acid alpha-glucosidase (GAA), and lysosomal glycogen storage. The current standard of treatment for PD is enzyme replacement therapy (ERT) with recombinant human GAA (rhGAA). Despite significant success of ERT in correcting some disease manifestations, limitations of its efficacy have emerged, due to several factors. Poor expression or abnormal intracellular distribution of the cation-independent mannose-6-phosphate receptor (M6PR) at the plasma membrane of specific cells has been identified as one of these factors. Here, we investigated whether activation of Transient Receptor Potential Mucolipin 1 (TRPML1) synergizes with ERT. TRPML1 is a lysosomal ion channel that has been shown to induce multiple effects, including regulation of calcium homeostasis, stimulation of autophagy, activation of lysosomal biogenesis and exocytosis, enhancement of vesicle and membrane trafficking. We studied the effects of two TRPML1 agonists in cultured fibroblasts from Pompe disease patients. Specifically, we analyzed M6PR availability at the plasma membrane of control and mutant cells, level of correction of GAA activity by rhGAA, processing and lysosomal trafficking of the recombinant enzyme. Treatment with two TRPML1 agonist drugs increased M6PR total amounts and its availability at the plasma membrane and improved M6PR intracellular recycling. The improvements in M6PR distribution translated into better correction of GAA activity in cells incubated with rhGAA and in improved lysosomal trafficking and processing of the recombinant enzyme. These data provide in vitro proof-of-concept evidence supporting the combination of ERT with pharmacological manipulation of secondarily altered M6PR distribution as a strategy to obtain better exposure of cells to therapeutic enzymes.

Open article ↗



2026-05-15 | Combined omalizumab and desensitization to control IgE-mediated hypersensitivity in enzyme replacement therapy for late-onset Pompe disease.

Pompe disease is a rare, progressive lysosomal storage disorder caused by acid α-glucosidase deficiency, leading to glycogen accumulation, proximal muscle weakness, and respiratory decline. Enzyme replacement therapy (ERT) significantly improves survival and stabilizes motor function, but IgE-mediated hypersensitivity reactions (HSRs) can critically compromise treatment, posing a major clinical challenge. Desensitization protocols allow temporary tolerance to ERT, yet breakthrough reactions may occur, necessitating adjunctive strategies such as omalizumab. We report a 40-year-old woman with late-onset Pompe disease who developed severe IgE-mediated HSRs to alglucosidase alfa after years of uneventful therapy. Basophil activation testing (BAT) and serum-specific IgE confirmed an IgE-mediated mechanism. A 15-step, 5-bag desensitization protocol allowed temporary tolerance, but breakthrough reactions required therapy interruption. Upon switching to avalglucosidase alfa, BAT demonstrated IgE cross-reactivity, and a new desensitization protocol was implemented. Initial infusions were complicated by recurrent HSRs. The addition of subcutaneous omalizumab (300 mg monthly), administered two days before ERT, enabled safe reintroduction. Moreover, therapy was resumed gradually, starting at 50% of the target dose and escalating stepwise to the full therapeutic dose, resulting in uninterrupted treatment. Follow-up showed stable neuromuscular and respiratory function, progressive decline in BAT reactivity, and improved quality of life. This case highlights the critical role of BAT in diagnosing and monitoring IgE-mediated HSRs, the efficacy of individualized desensitization protocols, and the utility of omalizumab as an adjunctive therapy in refractory cases. In rare diseases like Pompe, documenting such integrated allergological strategies provides practical guidance for maintaining access to life-prolonging therapy and offers a reproducible framework for managing complex allergic complications.

Open article ↗



2026-05-14 | Clinical, pathological and genetic features as well as follow-up of 68 patients with late-onset Pompe disease: a single-center retrospective study.

Pompe disease is a muscular lysosomal storage disorder characterized by autosomal recessive inheritance and caused by deficiency of the acid alpha-glucosidase (GAA) enzyme. Late-onset Pompe disease (LOPD) exhibits heterogeneous clinical presentations, which are influenced by the type of GAA mutation and residual enzyme activity. In this study, we conducted a retrospective analysis of 68 Chinese LOPD patients over a 17-year period at a single center to delineate the real-world disease status and survival outcomes. Among the 47 patients who received enzyme replacement therapy (ERT), the mortality rate was 6.4%, compared to 57.1% in the 21 patients who did not receive ERT. Muscle pathology analysis revealed that glycogenin accumulation appears earlier than autophagy marker, but this finding is exploratory and requires validation in larger studies. The severity of muscle pathology correlated with lower body mass index (BMI), shorter 6-min walk test (6MWT) and spinal curvature abnormalities. The most frequent GAA gene mutation identified was c.2238G > C (p.W746C), present in 43.3% of patients. In an exploratory subgroup analysis (n = 10), patients who initiated ERT shortly after diagnosis exhibited greater improvements in muscle strength and 6MWT results compared to those who started treatment later; however, the small sample size precludes definitive conclusions. In summary, our exploratory findings hypothesize that glycogenin may be an early pathological marker, but this requires prospective validation. ERT was associated with higher survival probability in this cohort, although survival bias limits causal inference. Earlier ERT initiation showed an association with better functional outcomes in a small subgroup. Lower BMI, shorter 6MWT, and spinal curvature abnormalities correlated with more severe muscle pathology in univariate analyses. All findings should be interpreted as hypothesis-generating due to study limitations.

Open article ↗



2026-06-12 | TRPML1 agonists synergize with enzyme replacement therapy in fibroblasts from Pompe disease patients.

Pompe disease is a severe and progressive metabolic myopathy caused by pathogenic variants of the GAA gene, deficiency of acid alpha-glucosidase (GAA), and lysosomal glycogen storage. The current standard of treatment for PD is enzyme replacement therapy (ERT) with recombinant human GAA (rhGAA). Despite significant success of ERT in correcting some disease manifestations, limitations of its efficacy have emerged, due to several factors. Poor expression or abnormal intracellular distribution of the cation-independent mannose-6-phosphate receptor (M6PR) at the plasma membrane of specific cells has been identified as one of these factors. Here, we investigated whether activation of Transient Receptor Potential Mucolipin 1 (TRPML1) synergizes with ERT. TRPML1 is a lysosomal ion channel that has been shown to induce multiple effects, including regulation of calcium homeostasis, stimulation of autophagy, activation of lysosomal biogenesis and exocytosis, enhancement of vesicle and membrane trafficking. We studied the effects of two TRPML1 agonists in cultured fibroblasts from Pompe disease patients. Specifically, we analyzed M6PR availability at the plasma membrane of control and mutant cells, level of correction of GAA activity by rhGAA, processing and lysosomal trafficking of the recombinant enzyme. Treatment with two TRPML1 agonist drugs increased M6PR total amounts and its availability at the plasma membrane and improved M6PR intracellular recycling. The improvements in M6PR distribution translated into better correction of GAA activity in cells incubated with rhGAA and in improved lysosomal trafficking and processing of the recombinant enzyme. These data provide in vitro proof-of-concept evidence supporting the combination of ERT with pharmacological manipulation of secondarily altered M6PR distribution as a strategy to obtain better exposure of cells to therapeutic enzymes.

Open article ↗



2026-05-15 | Combined omalizumab and desensitization to control IgE-mediated hypersensitivity in enzyme replacement therapy for late-onset Pompe disease.

Pompe disease is a rare, progressive lysosomal storage disorder caused by acid α-glucosidase deficiency, leading to glycogen accumulation, proximal muscle weakness, and respiratory decline. Enzyme replacement therapy (ERT) significantly improves survival and stabilizes motor function, but IgE-mediated hypersensitivity reactions (HSRs) can critically compromise treatment, posing a major clinical challenge. Desensitization protocols allow temporary tolerance to ERT, yet breakthrough reactions may occur, necessitating adjunctive strategies such as omalizumab. We report a 40-year-old woman with late-onset Pompe disease who developed severe IgE-mediated HSRs to alglucosidase alfa after years of uneventful therapy. Basophil activation testing (BAT) and serum-specific IgE confirmed an IgE-mediated mechanism. A 15-step, 5-bag desensitization protocol allowed temporary tolerance, but breakthrough reactions required therapy interruption. Upon switching to avalglucosidase alfa, BAT demonstrated IgE cross-reactivity, and a new desensitization protocol was implemented. Initial infusions were complicated by recurrent HSRs. The addition of subcutaneous omalizumab (300 mg monthly), administered two days before ERT, enabled safe reintroduction. Moreover, therapy was resumed gradually, starting at 50% of the target dose and escalating stepwise to the full therapeutic dose, resulting in uninterrupted treatment. Follow-up showed stable neuromuscular and respiratory function, progressive decline in BAT reactivity, and improved quality of life. This case highlights the critical role of BAT in diagnosing and monitoring IgE-mediated HSRs, the efficacy of individualized desensitization protocols, and the utility of omalizumab as an adjunctive therapy in refractory cases. In rare diseases like Pompe, documenting such integrated allergological strategies provides practical guidance for maintaining access to life-prolonging therapy and offers a reproducible framework for managing complex allergic complications.

Open article ↗



2026-05-14 | Clinical, pathological and genetic features as well as follow-up of 68 patients with late-onset Pompe disease: a single-center retrospective study.

Pompe disease is a muscular lysosomal storage disorder characterized by autosomal recessive inheritance and caused by deficiency of the acid alpha-glucosidase (GAA) enzyme. Late-onset Pompe disease (LOPD) exhibits heterogeneous clinical presentations, which are influenced by the type of GAA mutation and residual enzyme activity. In this study, we conducted a retrospective analysis of 68 Chinese LOPD patients over a 17-year period at a single center to delineate the real-world disease status and survival outcomes. Among the 47 patients who received enzyme replacement therapy (ERT), the mortality rate was 6.4%, compared to 57.1% in the 21 patients who did not receive ERT. Muscle pathology analysis revealed that glycogenin accumulation appears earlier than autophagy marker, but this finding is exploratory and requires validation in larger studies. The severity of muscle pathology correlated with lower body mass index (BMI), shorter 6-min walk test (6MWT) and spinal curvature abnormalities. The most frequent GAA gene mutation identified was c.2238G > C (p.W746C), present in 43.3% of patients. In an exploratory subgroup analysis (n = 10), patients who initiated ERT shortly after diagnosis exhibited greater improvements in muscle strength and 6MWT results compared to those who started treatment later; however, the small sample size precludes definitive conclusions. In summary, our exploratory findings hypothesize that glycogenin may be an early pathological marker, but this requires prospective validation. ERT was associated with higher survival probability in this cohort, although survival bias limits causal inference. Earlier ERT initiation showed an association with better functional outcomes in a small subgroup. Lower BMI, shorter 6MWT, and spinal curvature abnormalities correlated with more severe muscle pathology in univariate analyses. All findings should be interpreted as hypothesis-generating due to study limitations.

Open article ↗



Access all drug discovery articles and probability of success in trials forecasts:

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Drug Discovery Landscape

31 orphan drug designations for Glycogen storage disease due to acid maltase deficiency, including 3 approved therapies.

31 orphan drug designations for Glycogen storage disease due to acid maltase deficiency, including 3 approved therapies.

Drug

Therapy type

Regulator

Orphan designation

Approval

Sponsor

non-replicating single stranded recombinant adeno-associated viral vector with a thyroxine hormone binding globulin (THBG) promoter expressing the modified human acid alpha-glucosidase gene (hGAA)

gene therapies

FDA

2025-10-16

AskBio Inc.

recombinant adeno-associated virus serotype 9 vector expressing codon optimized human GAA gene

gene therapies

FDA

2025-02-28

Beijing Genecradle Therapeutics Co., Ltd.

Autologous CD34+ cells transduced with a lentiviral vector containing the human GAA gene

gene therapies

EMA

2023-02-15

Erasmus Universitair Medisch Centrum Rotterdam (Erasmus MC)

selective inhibitor of GYS1

proteins

FDA

2022-08-12

Shionogi Inc.

CD71 Binding Centyrin-GYS1 siRNA

RNAs

FDA

2022-08-01

Aro Biotherapeutics Company

Adeno-associated viral vector expressing acid alpha-glucosidase gene

gene therapies

EMA

2020-07-27

Astellas Pharma Europe B.V.

recombinant adeno-associated viral vector serotype 8 encoding human acid alpha-glucosidase

gene therapies

FDA

2019-12-31

Astellas Gene Therapies, Inc.

Vanglusagene ensiparvovec

gene therapies

EMA

2019-06-28

Spark Therapeutics Ireland Limited

recombinant adeno-associated viral (AAV) vector that contains a bio-engineered capsid (AAV-Spark100) and a codon-optimized expression cassette to drive expression of a secretable form of human acid a-glucosidase (GAA)

gene therapies

FDA

2019-02-01

Genentech, Inc., a Member of the Roche Group

Miglustat [Opfolda]

small molecules

EMA

2019-01-11

Amicus Therapeutics Europe Limited

clervonafusp alfa

proteins

FDA

2018-10-04

Valerion Therapeutics, LLC

Adeno-associated viral vector expressing acid alpha-glucosidase gene

gene therapies

EMA

2018-04-16

[INACTIVE] AskBio France

Alglucosidase alfa [Pombiliti]

proteins

EMA

2018-03-21

Amicus Therapeutics Europe Limited

cipaglucosidase alfa-atga and miglustat [Pombiliti and Opfolda]

proteins

FDA

2017-09-13

2023-09-28

Amicus Therapeutics, Inc.

Non-replicating recombinant adeno-associated viral vector expressing the human acid alpha-glucosidase gene

gene therapies

FDA

2017-01-11

Asklepios Biopharmaceutics, Inc

clenbuterol

small molecules

FDA

2017-01-09

Avenue Therapeutics, Inc.

Recombinant human acid alpha-glucosidase conjugated with mannose-6-phosphate analogues

proteins

EMA

2016-08-29

NanoMedSyn

clenbuterol

proteins

FDA

2014-10-27

Duke University Medical Center

Avalglucosidase alfa [Nexviadyme]

proteins

EMA

2014-03-26

Sanofi B.V.

avalglucosidase alfa-ngpt [Nexviazyme]

proteins

FDA

2013-11-19

2021-08-06

Genzyme Corporation, a Sanofi Company

Recombinant adeno-associated viral vector containing human acid alfa-glucosidase-gene

gene therapies

EMA

2012-07-04

Sarepta Therapeutics Ireland Limited

Glycosylation independent lysosomal targeting tagged recombinant human acid alpha glucosidase

proteins

EMA

2011-10-27

BioMarin International Limited

reveglucosidase alfa

proteins

FDA

2010-08-20

BioMarin Pharmaceutical, Inc.

Triheptanoin

small molecules

FDA

2008-02-01

Baylor Research Institute

RECOMBINANT ADENO-ASSOCIATED VIRAL VECTOR CONTAINING THE HUMAN ACID ALFA-GLUCOSIDASE GENE

gene therapies

EMA

2007-07-09

TMC Pharma Services Limited

duvoglustat hydrochloride

small molecules

FDA

2007-06-18

Amicus Therapeutics, Inc

Adeno-associated viral vector expressing human acid alpha glucosidase gene

gene therapies

FDA

2007-03-20

Audentes Therapeutics, Inc.

Alglucosidase alfa [Myozyme]

proteins

EMA

2001-02-14

[INACTIVE] Sanofi B.V.

Recombinant human highly phosphorylated acid alpha-glucosidase

proteins

FDA

2000-09-20

Novazyme Pharmaceuticals, Inc.

Recombinant human acid alpha-glucosidase; alglucosidase alfa [1. Myozyme 2. Lumizyme]

proteins

FDA

1997-08-19

2006-04-28

Genzyme Corporation

Human acid precursor alpha-glucosidase, recombinant

proteins

FDA

1996-09-10

Pharming/Genzyme LLC

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At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.