AI Drug Discovery for Pharma and Biotech

Drug discovery

6

drugs

With orphan designations

Overview

Alagille syndrome is a multisystem autosomal dominant disorder caused by JAG1 or NOTCH2 gene mutations, disrupting Notch signaling [2][10]. It primarily manifests as cholestasis due to bile duct paucity, with characteristic facial features, cardiac anomalies (e.g., pulmonic stenosis), and ocular/skeletal involvement [1][5][7]. Disease severity varies widely, ranging from asymptomatic carriers to life-threatening liver/cardiac complications [4][11].

Population

  • Prevalence: ~1:30,000–50,000 live births [11][19]

  • 30-50% inherit mutations; remaining cases are de novo [2][11]

  • Diagnosed via clinical criteria (3/5 features: cholestasis, cardiac defects, butterfly vertebrae, embryotoxon, facial dysmorphism) ± genetic testing [5][18]

Burden

  • 11-35% mortality over decades, primarily from cardiac/vascular complications [4][15]

  • 66-88% experience debilitating pruritus; 30-40% develop xanthomas [10][13]

  • Impaired HRQoL scores (PedsQL 4.0: 57.1 vs 83.3 in controls) [13], frequent hospitalizations, and high transplant-related costs [9][13]

Therapies

  • Medical: IBAT inhibitors (maralixibat/odevixibat) for pruritus [8][20], ursodiol, rifampin, antihistamines [12][16], and fat-soluble vitamin supplementation [3][14]

  • Surgical: Partial external biliary diversion for refractory pruritus; liver transplantation in 15-47% by adolescence [3][16]

  • Supportive: High-calorie diets, MCT-rich formulas, gastrostomy feeding for growth failure [3][16]

Categories: rare abdominal surgical diseases, rare cardiac malformations, rare developmental anomalies during embryogenesis, rare genetic diseases, rare hepatic diseases, rare neoplastic diseases, rare ophthalmic disorders, rare renal diseases, rare transplant-related disorders

Research Papers

321 drug discovery papers about Alagille syndrome, with 4 first-in-class and 4 next-in-class emerging drug candidates forecasted to outperform the average preclinical success rate. Recent publications:

321 drug discovery papers about Alagille syndrome, with 4 first-in-class and 4 next-in-class emerging drug candidates forecasted to outperform the average preclinical success rate. Recent publications:

2026-08-12 | Long-Term Outcomes of Living Donor Liver Transplantation in Children With Alagille Syndrome: Results From Vanguard Multicenter Study of International Living Donor Liver Transplantation Group.

The morbidity and mortality after living donor liver transplantation (LDLT) in children with Alagille syndrome (AGS) are complex because of the multisystem involvement of the disease. Evidence on long-term outcomes and donor selection remains limited. This multicenter retrospective study included 49 pediatric patients with AGS who underwent LDLT between 2001 and 2020 at eight institutions in Japan, Korea, and Turkey. Clinical characteristics, transplant indications, donor selection, posttransplant growth, renal function, and complications were analyzed. The median age at LDLT was 1.1 years. Major indications for transplantation were severe growth failure (91.8%) and advanced liver disease with hepatic dysfunction. Based on donor evaluations, 11% of candidates were excluded due to genetic or anatomical concerns. The 5-year patient and graft survival rates were 93.7% and 91.5%, respectively. LDLT before 2 years of age was associated with significantly greater catch-up in height and weight. Long-term renal deterioration was observed, particularly beyond 15 years after transplantation, and older age at LDLT was an independent predictor of lower long-term estimated glomerular filtration rate. Cardiac anomalies were manageable with appropriate preoperative evaluation, whereas vasculopathies were observed after adolescence. A history of Kasai portoenterostomy did not significantly affect posttransplant outcomes. LDLT provides excellent short- and long-term outcomes in pediatric AGS. Timely LT may improve growth and preserve renal function before progressive multisystem complications become established. Long-term surveillance and comprehensive donor evaluation remain essential.

Open article ↗



2026-07-25 | Three high throughput compatible cell-based assays for identifying small molecule JAG1 upregulators for Alagille syndrome.

Haploinsufficiency disorders arise when loss of function mutations in one allele of a gene reduce gene dosage below the level required for normal physiology. Pharmacologic upregulation of the remaining functional allele represents a promising therapeutic strategy but requires screening assays capable of detecting modest changes in endogenous gene expression. Here we developed and compared three high throughput cell-based assays for identifying small molecule upregulators of JAG1, the gene most frequently mutated in Alagille syndrome (ALGS). The assays measure JAG1 expression at different molecular levels: RNA fluorescence in situ hybridization (RNA FISH) for JAG1 mRNA, immunofluorescence (IF) for endogenous JAG1 protein, and a HiBiT luminescence assay using CRISPR engineered LX-2 hepatic stellate cells expressing HiBiT tagged JAG1. Each assay was optimized in 384-well format and benchmarked using a panel of 32 histone deacetylase inhibitors (HDACi), compounds known to broadly increase gene expression. All three assays detected JAG1 upregulation and identified overlapping sets of active compounds. The homogeneous HiBiT assay showed the most favorable high throughput screening statistics (S/B = 2.7 and Z' > 0.5) and the lowest well to well variability, whereas the RNA FISH and IF assays provided higher signal to basal ratios and single cell resolution. Entinostat, Mocetinostat, and Chidamide were consistently identified as the most potent JAG1 upregulators across all assays. These complementary assays provide a flexible platform for identifying small molecule modulators of gene dosage and may be broadly applicable to drug discovery efforts targeting haploinsufficiency diseases.

Open article ↗



2026-06-18 | Heterozygous variants in NOTCH2 in a cohort of juvenile and adult patients with cholestatic liver disease: Disease modifiers or innocent bystanders?

Background and objective: Genetic cholestatic liver diseases are increasingly stratified using NGS. The resulting information can guide treatment with novel drugs such as IBAT inhibitors, which have demonstrated efficacy in congenital liver disorders including Alagille syndrome and PFIC. We hypothesised [for full text, please go to the a.m. URL]

Open article ↗



2026-06-18 | Use of genetic analysis in adult cholestatic liver disease: lessons from progressive paediatric syndromes and cohort studies.

The increasing availability and decreasing costs of DNA sequencing have resulted in the re-grouping of rare, severe paediatric cases of progressive familial intrahepatic cholestasis (PFIC) with more frequent, later-onset cases of cholestasis (eg, intrahepatic cholestasis of pregnancy, benign recurrent intrahepatic cholestasis, low phospholipid-associated cholelithiasis) under the umbrella of genetic cholestasis. The common denominator is the presence of functional variants in the PFIC-associated genes, predominantly in ABCB4, ABCB11 and ATP8B1, which cause PFIC types 1-3. Several other congenital diseases such as Alagille syndrome and alpha1-antitrypsin deficiency comprise cholestatic pruritus as frequent symptoms.With the availability of intestinal bile acid transporter inhibitors (IBATi) as new and efficacious therapeutics for pruritus, the most debilitating symptom of PFIC, it is essential to envision their usefulness for patients with later-onset cholestatic liver disease suffering from pruritus.In this review, we summarise published studies on the genetic makeup of patients with paediatric, juvenile and adult-onset cholestasis, and discuss their findings with respect to genotype-specific treatment with IBATi, ursodeoxycholic acid, or alternative drugs. The aim is to provide an overview of the genetic variants likely to be encountered in future sequencing investigations of patients with cholestatic liver diseases, and how to translate this genetic information into personalised treatment recommendations.

Open article ↗



2026-05-04 | From supportive to targeted treatment strategies: the changing landscape of therapeutics in Alagille syndrome

1. Alagille syndrome (ALGS) is an autosomal dominant developmental disorder characterized by highly variable, multisystem involvement and caused by pathogenic variants in the genes Jagged1 (JAG1) a...

Open article ↗



2026-08-12 | Long-Term Outcomes of Living Donor Liver Transplantation in Children With Alagille Syndrome: Results From Vanguard Multicenter Study of International Living Donor Liver Transplantation Group.

The morbidity and mortality after living donor liver transplantation (LDLT) in children with Alagille syndrome (AGS) are complex because of the multisystem involvement of the disease. Evidence on long-term outcomes and donor selection remains limited. This multicenter retrospective study included 49 pediatric patients with AGS who underwent LDLT between 2001 and 2020 at eight institutions in Japan, Korea, and Turkey. Clinical characteristics, transplant indications, donor selection, posttransplant growth, renal function, and complications were analyzed. The median age at LDLT was 1.1 years. Major indications for transplantation were severe growth failure (91.8%) and advanced liver disease with hepatic dysfunction. Based on donor evaluations, 11% of candidates were excluded due to genetic or anatomical concerns. The 5-year patient and graft survival rates were 93.7% and 91.5%, respectively. LDLT before 2 years of age was associated with significantly greater catch-up in height and weight. Long-term renal deterioration was observed, particularly beyond 15 years after transplantation, and older age at LDLT was an independent predictor of lower long-term estimated glomerular filtration rate. Cardiac anomalies were manageable with appropriate preoperative evaluation, whereas vasculopathies were observed after adolescence. A history of Kasai portoenterostomy did not significantly affect posttransplant outcomes. LDLT provides excellent short- and long-term outcomes in pediatric AGS. Timely LT may improve growth and preserve renal function before progressive multisystem complications become established. Long-term surveillance and comprehensive donor evaluation remain essential.

Open article ↗



2026-07-25 | Three high throughput compatible cell-based assays for identifying small molecule JAG1 upregulators for Alagille syndrome.

Haploinsufficiency disorders arise when loss of function mutations in one allele of a gene reduce gene dosage below the level required for normal physiology. Pharmacologic upregulation of the remaining functional allele represents a promising therapeutic strategy but requires screening assays capable of detecting modest changes in endogenous gene expression. Here we developed and compared three high throughput cell-based assays for identifying small molecule upregulators of JAG1, the gene most frequently mutated in Alagille syndrome (ALGS). The assays measure JAG1 expression at different molecular levels: RNA fluorescence in situ hybridization (RNA FISH) for JAG1 mRNA, immunofluorescence (IF) for endogenous JAG1 protein, and a HiBiT luminescence assay using CRISPR engineered LX-2 hepatic stellate cells expressing HiBiT tagged JAG1. Each assay was optimized in 384-well format and benchmarked using a panel of 32 histone deacetylase inhibitors (HDACi), compounds known to broadly increase gene expression. All three assays detected JAG1 upregulation and identified overlapping sets of active compounds. The homogeneous HiBiT assay showed the most favorable high throughput screening statistics (S/B = 2.7 and Z' > 0.5) and the lowest well to well variability, whereas the RNA FISH and IF assays provided higher signal to basal ratios and single cell resolution. Entinostat, Mocetinostat, and Chidamide were consistently identified as the most potent JAG1 upregulators across all assays. These complementary assays provide a flexible platform for identifying small molecule modulators of gene dosage and may be broadly applicable to drug discovery efforts targeting haploinsufficiency diseases.

Open article ↗



2026-06-18 | Heterozygous variants in NOTCH2 in a cohort of juvenile and adult patients with cholestatic liver disease: Disease modifiers or innocent bystanders?

Background and objective: Genetic cholestatic liver diseases are increasingly stratified using NGS. The resulting information can guide treatment with novel drugs such as IBAT inhibitors, which have demonstrated efficacy in congenital liver disorders including Alagille syndrome and PFIC. We hypothesised [for full text, please go to the a.m. URL]

Open article ↗



2026-06-18 | Use of genetic analysis in adult cholestatic liver disease: lessons from progressive paediatric syndromes and cohort studies.

The increasing availability and decreasing costs of DNA sequencing have resulted in the re-grouping of rare, severe paediatric cases of progressive familial intrahepatic cholestasis (PFIC) with more frequent, later-onset cases of cholestasis (eg, intrahepatic cholestasis of pregnancy, benign recurrent intrahepatic cholestasis, low phospholipid-associated cholelithiasis) under the umbrella of genetic cholestasis. The common denominator is the presence of functional variants in the PFIC-associated genes, predominantly in ABCB4, ABCB11 and ATP8B1, which cause PFIC types 1-3. Several other congenital diseases such as Alagille syndrome and alpha1-antitrypsin deficiency comprise cholestatic pruritus as frequent symptoms.With the availability of intestinal bile acid transporter inhibitors (IBATi) as new and efficacious therapeutics for pruritus, the most debilitating symptom of PFIC, it is essential to envision their usefulness for patients with later-onset cholestatic liver disease suffering from pruritus.In this review, we summarise published studies on the genetic makeup of patients with paediatric, juvenile and adult-onset cholestasis, and discuss their findings with respect to genotype-specific treatment with IBATi, ursodeoxycholic acid, or alternative drugs. The aim is to provide an overview of the genetic variants likely to be encountered in future sequencing investigations of patients with cholestatic liver diseases, and how to translate this genetic information into personalised treatment recommendations.

Open article ↗



2026-05-04 | From supportive to targeted treatment strategies: the changing landscape of therapeutics in Alagille syndrome

1. Alagille syndrome (ALGS) is an autosomal dominant developmental disorder characterized by highly variable, multisystem involvement and caused by pathogenic variants in the genes Jagged1 (JAG1) a...

Open article ↗



Access all drug discovery papers and probability of success in trials forecasts:

Access all drug discovery papers and probability of success in trials forecasts:

Drug Discovery Landscape

6 orphan drug designations for Alagille syndrome, including 3 approved therapies.

6 orphan drug designations for Alagille syndrome, including 3 approved therapies.

Drug

Therapy type

Regulator

Orphan designation

Approval

Sponsor

27mer antisense oligonucleotide with methoxyethyl, 2'-O-methyl, and phosphorothioate modifications

oligonucleotides

FDA

2024-10-24

Arnatar Therapeutics, Inc.

odevixibat [Bylvay]

small molecules

FDA

2018-10-15

2023-06-13

Ipsen Biopharmaceuticals, Inc.

(4R,5R)-1-[[4-[[4-[3,3-dibutyl-7-(dimethylamino)-2,3,4,5-tetrahydro-4-hydroxy-1,1-dioxido-1-benzothiepin-5-yl]phenoxy]methyl]phenyl]methyl]-4-aza-1-azoniabicyclo[2.2.2]octane chloride [Livmarli]

small molecules

EMA

2013-12-18

2022-12-12

Mirum Pharmaceuticals International B.V.

maralixibat [Livmarli]

small molecules

FDA

2013-09-04

2021-09-29

Mirum Pharmaceuticals, Inc.

Odevixibat sesquihydrate [Bylvay]

small molecules

EMA

2012-08-09

Albireo AB

Buffered Ursodeoxycholic Acid

small molecules

FDA

2004-09-03

Digestive Care, Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.