AI Drug Discovery for Pharma and Biotech

Drug discovery

22

drugs

With orphan designations

Overview

Ornithine transcarbamylase deficiency (OTCD) is an X-linked urea cycle disorder caused by mutations in the OTC gene, leading to impaired ammonia detoxification. Accumulated ammonia causes neurotoxicity, presenting as lethargy, vomiting, seizures, or coma, with severity ranging from neonatal hyperammonemic crisis to late-onset episodic encephalopathy. Diagnosis involves elevated plasma ammonia, low citrulline, genetic testing, and urine orotic acid analysis [1][6][9]. Management combines protein restriction, nitrogen scavengers (e.g., sodium phenylbutyrate), arginine/citrulline supplementation, and emergent hemodialysis for acute crises [5][10]. Liver transplantation remains the only curative option [3][15].

Population

  • Prevalence: Estimated 1:14,000–1:77,000 [1][8][9]; neonatal-onset predominantly affects males, while 10–40% of heterozygous females develop symptoms due to skewed X-inactivation [6][16].

  • Mortality: ~43–50% in untreated neonatal-onset cases [1][16]; 11-year survival rates: 35% for early-onset vs. 87% for late-onset hyperammonemia [4].

Burden

  • Neurological: Intellectual disability, developmental delays, or metabolic stroke in 20–50% of survivors [1][7][16].

  • Systemic: Chronic liver dysfunction, coagulopathy, and risk of acute liver failure during decompensation [6][15].

  • Quality of life: Lifelong dietary/medication adherence, recurrent hospitalizations, and high economic burden [4][14].

Therapies

  • Acute: Hemodialysis (for氨 >500 µmol/L), IV sodium benzoate/phenylacetate, and arginine [5][10].

  • Chronic: Protein-restricted diet, oral scavengers (glycerol phenylbutyrate), citrulline/arginine supplementation [5][12].

  • Curative: Liver transplantation (prevents recurrent crises but requires lifelong immunosuppression) [3][15].

Categories: rare genetic diseases, rare inborn errors of metabolism, rare neurological diseases

Research Papers

370 drug discovery papers about Ornithine transcarbamylase deficiency, with 3 first-in-class and 4 next-in-class emerging drug candidates forecasted to outperform the average preclinical success rate. Recent publications:

370 drug discovery papers about Ornithine transcarbamylase deficiency, with 3 first-in-class and 4 next-in-class emerging drug candidates forecasted to outperform the average preclinical success rate. Recent publications:

2026-07-14 | Citrulline drives age-related lipid deposition for healthspan

Too much or too less lipid deposition increases mortality, while in contrast, modest lipid deposition during aging is crucial for healthspan. How animals determine the aging state and then promote appropriate lipid deposition for lifespan benefits are largely unknown. In this study, we identified citrulline as a key metabolite driving aging-related lipid deposition for healthspan in Caenorhabditis elegans. Citrulline deficiency reduced aging-related lipid accumulation and shortened lifespan, an effect reversible by dietary supplementation. Mechanistically, during aging, the transcription factor MXL-3 is activated to upregulate the expression of pyr-1, encoding ornithine transcarbamylase (OTC), for the production of citrulline, which then activates the lipogenic enzymes DGAT-2 and MBOA-2 to consequently promote lipid synthesis and deposition for lifespan extension. Collectively, we uncover a MXL-3-citrulline-lipogensis axis to ensure healthspan, providing distinct insights into metabolic aging. Modest lipid deposition during aging benefits healthspan. Li et al reported that aging activates transcription factor MXL-3, which triggers citrulline biosynthesis to promote lipogenesis for lipid deposition, thereby driving healthspan.

Open article ↗



2026-07-10 | Functional Editing of the OTC locus by Targeted Integration with Phenotype Correction and Restoration of Physiological Patterns of Expression.

Here we report highly efficient functional repair of the ornithine transcarbamylase (OTC) locus in mutant mouse and human hepatocytes in vivo using a dual AAV system delivering CRISPR-Cas9 editing reagents and a promoterless donor for targeted integration. The approach was mutation agnostic and targeted intronic sequences to prevent inadvertent inactivation of hypomorphic alleles. Notably, in a murine model, we corrected the metabolic defect and simultaneously achieved liver-wide restoration of physiological metabolic zonation of Otc expression by capturing native cis-acting regulatory elements. The effectiveness of this approach was confirmed using a universally configured therapeutic cassette in patient-derived primary human hepatocytes in vivo. These data provide a powerful template to guide further optimization of this approach and, given the high editing efficacy required for phenotypic effect in OTC deficiency, have broader relevance to other liver disease phenotypes.

Open article ↗



2026-05-29 | Rewriting hepatic fate: emerging gene therapy strategies for liver disease

Several anatomical and physiological features make the liver particularly suitable for gene-based therapeutic strategies, including its extensive vascularization, fenestrated sinusoidal endothelium, and high metabolic capacity. In the past decade, liver-directed gene therapies have evolved from experimental concepts to clinical applications for various inherited and systemic disorders. Adeno-associated viral vectors, lentiviral systems, and lipid nanoparticles are currently the main platforms for delivering therapeutic genes and genome-editing tools to hepatocytes. Genome editing technologies such as CRISPR-Cas nucleases, base editors, and prime editors have enabled more precise modification of endogenous loci. Early clinical studies in disorders like hemophilia, transthyretin amyloidosis, ornithine transcarbamylase deficiency, and Crigler-Najjar syndrome show that partial correction of hepatic gene function can lead to meaningful clinical benefits. However, several challenges hinder broader clinical implementation, including immune responses to viral capsids and nanoparticle components, dose-dependent toxicity, limited packaging capacity of some vectors, and uncertainties about long-term safety and durability, especially in pediatric populations. Efficient and cell-type-specific delivery beyond hepatocytes remains a major challenge, particularly for diseases driven by non-parenchymal cells or malignant transformation. This article discusses recent advancements in delivery technologies and genome editing approaches for liver disease, as well as current translational barriers and emerging strategies aimed at enhancing specificity, durability, and safety. Collectively, these advances suggest that increasingly precise and programmable gene-based interventions may play a central role in future therapies for a broad spectrum of liver diseases.

Open article ↗



2026-05-25 | Unilateral cerebral injury mimicking hemiconvulsion-hemiplegia-epilepsy syndrome in a boy with newly diagnosed infantile-onset ornithine transcarbamylase deficiency: A case report and literature review

Background Ornithine transcarbamylase deficiency, the most common urea cycle disorder, typically presents with neurological symptoms caused by hyperammonemia. Although brain injuries are typically diffuse, unilateral lesions have been reported. Hemiconvulsion–hemiplegia–epilepsy syndrome is a neurological disorder occurring in infancy or early childhood, characterized by prolonged unilateral seizures, subsequent cerebral hemiatrophy, and epilepsy. These conditions may have overlapping clinical features. Case A 4-month-old boy presented with fever and asymmetric seizures during an adenovirus infection. Blood tests revealed hyperammonemia, elevated liver enzyme levels, coagulopathy, and lactic acidosis. Brain MRI showed diffuse cortical edema in the left hemisphere with abnormal EEG discharges. Hemiconvulsion–hemiplegia–epilepsy syndrome was provisionally suspected, and steroid pulse therapy and supportive treatment were initiated. Due to fluctuating blood ammonia levels, arginine was administered. Further metabolic evaluation demonstrated increased urinary orotic acid excretion, low plasma citrulline and arginine levels, and elevated plasma glutamine. A family history of neonatal-onset disease supported the clinical diagnosis. The patient was treated with a protein-restricted diet, citrulline, arginine, and sodium phenylbutyrate. At 1 year and 2 months of age, he showed mild right upper limb weakness without epilepsy. A review of the literature identified seven cases of urea cycle disorders with unilateral brain lesions, six involving ornithine transcarbamylase deficiency. Conclusion In ornithine transcarbamylase deficiency, acute infection may trigger unilateral cerebral injury, mimicking the hemiconvulsion–hemiplegia–epilepsy syndrome. Early metabolic intervention may help mitigate hyperammonemia and reduce the risk of neurological injury, highlighting the importance of considering metabolic disorders in infants with unilateral brain injury.

Open article ↗



2026-04-23 | Profiling and Targeting of Regulatory RNAs to Upregulate Gene Expression

Abstract Transcription of long noncoding RNAs (lncRNAs), including enhancer RNAs (eRNAs) and promoter-associated RNAs (paRNAs), collectively termed regulatory RNAs (regRNAs), is a hallmark of active gene expression, yet it remains unknown whether regRNAs can be targeted to selectively enhance transcription in cis . We developed regRNA Capture-seq, a high-throughput method to profile regRNAs, and applied it to primary human hepatocytes, annotating thousands of regRNAs at ∼2,000 enhancers and promoters. Using this approach, we interrogated a genetically validated enhancer of the ornithine transcarbamylase ( OTC ) gene, mutations of which cause OTC deficiency (OTCD), the most common urea cycle disorder. Antisense oligonucleotides (ASOs) targeting enhancer-derived regRNAs led to dose-dependent upregulation of OTC in hepatocytes. Mechanistically, ASOs altered regRNA structure, elevated regRNA levels, displaced transcriptional repressors, and increased H3K27 acetylation at the targeted enhancer. This work establishes a potential therapeutic strategy for addressing haploinsufficiency and highlights regRNAs as actionable targets for ASO-mediated upregulation of gene expression.

Open article ↗



2026-07-14 | Citrulline drives age-related lipid deposition for healthspan

Too much or too less lipid deposition increases mortality, while in contrast, modest lipid deposition during aging is crucial for healthspan. How animals determine the aging state and then promote appropriate lipid deposition for lifespan benefits are largely unknown. In this study, we identified citrulline as a key metabolite driving aging-related lipid deposition for healthspan in Caenorhabditis elegans. Citrulline deficiency reduced aging-related lipid accumulation and shortened lifespan, an effect reversible by dietary supplementation. Mechanistically, during aging, the transcription factor MXL-3 is activated to upregulate the expression of pyr-1, encoding ornithine transcarbamylase (OTC), for the production of citrulline, which then activates the lipogenic enzymes DGAT-2 and MBOA-2 to consequently promote lipid synthesis and deposition for lifespan extension. Collectively, we uncover a MXL-3-citrulline-lipogensis axis to ensure healthspan, providing distinct insights into metabolic aging. Modest lipid deposition during aging benefits healthspan. Li et al reported that aging activates transcription factor MXL-3, which triggers citrulline biosynthesis to promote lipogenesis for lipid deposition, thereby driving healthspan.

Open article ↗



2026-07-10 | Functional Editing of the OTC locus by Targeted Integration with Phenotype Correction and Restoration of Physiological Patterns of Expression.

Here we report highly efficient functional repair of the ornithine transcarbamylase (OTC) locus in mutant mouse and human hepatocytes in vivo using a dual AAV system delivering CRISPR-Cas9 editing reagents and a promoterless donor for targeted integration. The approach was mutation agnostic and targeted intronic sequences to prevent inadvertent inactivation of hypomorphic alleles. Notably, in a murine model, we corrected the metabolic defect and simultaneously achieved liver-wide restoration of physiological metabolic zonation of Otc expression by capturing native cis-acting regulatory elements. The effectiveness of this approach was confirmed using a universally configured therapeutic cassette in patient-derived primary human hepatocytes in vivo. These data provide a powerful template to guide further optimization of this approach and, given the high editing efficacy required for phenotypic effect in OTC deficiency, have broader relevance to other liver disease phenotypes.

Open article ↗



2026-05-29 | Rewriting hepatic fate: emerging gene therapy strategies for liver disease

Several anatomical and physiological features make the liver particularly suitable for gene-based therapeutic strategies, including its extensive vascularization, fenestrated sinusoidal endothelium, and high metabolic capacity. In the past decade, liver-directed gene therapies have evolved from experimental concepts to clinical applications for various inherited and systemic disorders. Adeno-associated viral vectors, lentiviral systems, and lipid nanoparticles are currently the main platforms for delivering therapeutic genes and genome-editing tools to hepatocytes. Genome editing technologies such as CRISPR-Cas nucleases, base editors, and prime editors have enabled more precise modification of endogenous loci. Early clinical studies in disorders like hemophilia, transthyretin amyloidosis, ornithine transcarbamylase deficiency, and Crigler-Najjar syndrome show that partial correction of hepatic gene function can lead to meaningful clinical benefits. However, several challenges hinder broader clinical implementation, including immune responses to viral capsids and nanoparticle components, dose-dependent toxicity, limited packaging capacity of some vectors, and uncertainties about long-term safety and durability, especially in pediatric populations. Efficient and cell-type-specific delivery beyond hepatocytes remains a major challenge, particularly for diseases driven by non-parenchymal cells or malignant transformation. This article discusses recent advancements in delivery technologies and genome editing approaches for liver disease, as well as current translational barriers and emerging strategies aimed at enhancing specificity, durability, and safety. Collectively, these advances suggest that increasingly precise and programmable gene-based interventions may play a central role in future therapies for a broad spectrum of liver diseases.

Open article ↗



2026-05-25 | Unilateral cerebral injury mimicking hemiconvulsion-hemiplegia-epilepsy syndrome in a boy with newly diagnosed infantile-onset ornithine transcarbamylase deficiency: A case report and literature review

Background Ornithine transcarbamylase deficiency, the most common urea cycle disorder, typically presents with neurological symptoms caused by hyperammonemia. Although brain injuries are typically diffuse, unilateral lesions have been reported. Hemiconvulsion–hemiplegia–epilepsy syndrome is a neurological disorder occurring in infancy or early childhood, characterized by prolonged unilateral seizures, subsequent cerebral hemiatrophy, and epilepsy. These conditions may have overlapping clinical features. Case A 4-month-old boy presented with fever and asymmetric seizures during an adenovirus infection. Blood tests revealed hyperammonemia, elevated liver enzyme levels, coagulopathy, and lactic acidosis. Brain MRI showed diffuse cortical edema in the left hemisphere with abnormal EEG discharges. Hemiconvulsion–hemiplegia–epilepsy syndrome was provisionally suspected, and steroid pulse therapy and supportive treatment were initiated. Due to fluctuating blood ammonia levels, arginine was administered. Further metabolic evaluation demonstrated increased urinary orotic acid excretion, low plasma citrulline and arginine levels, and elevated plasma glutamine. A family history of neonatal-onset disease supported the clinical diagnosis. The patient was treated with a protein-restricted diet, citrulline, arginine, and sodium phenylbutyrate. At 1 year and 2 months of age, he showed mild right upper limb weakness without epilepsy. A review of the literature identified seven cases of urea cycle disorders with unilateral brain lesions, six involving ornithine transcarbamylase deficiency. Conclusion In ornithine transcarbamylase deficiency, acute infection may trigger unilateral cerebral injury, mimicking the hemiconvulsion–hemiplegia–epilepsy syndrome. Early metabolic intervention may help mitigate hyperammonemia and reduce the risk of neurological injury, highlighting the importance of considering metabolic disorders in infants with unilateral brain injury.

Open article ↗



2026-04-23 | Profiling and Targeting of Regulatory RNAs to Upregulate Gene Expression

Abstract Transcription of long noncoding RNAs (lncRNAs), including enhancer RNAs (eRNAs) and promoter-associated RNAs (paRNAs), collectively termed regulatory RNAs (regRNAs), is a hallmark of active gene expression, yet it remains unknown whether regRNAs can be targeted to selectively enhance transcription in cis . We developed regRNA Capture-seq, a high-throughput method to profile regRNAs, and applied it to primary human hepatocytes, annotating thousands of regRNAs at ∼2,000 enhancers and promoters. Using this approach, we interrogated a genetically validated enhancer of the ornithine transcarbamylase ( OTC ) gene, mutations of which cause OTC deficiency (OTCD), the most common urea cycle disorder. Antisense oligonucleotides (ASOs) targeting enhancer-derived regRNAs led to dose-dependent upregulation of OTC in hepatocytes. Mechanistically, ASOs altered regRNA structure, elevated regRNA levels, displaced transcriptional repressors, and increased H3K27 acetylation at the targeted enhancer. This work establishes a potential therapeutic strategy for addressing haploinsufficiency and highlights regRNAs as actionable targets for ASO-mediated upregulation of gene expression.

Open article ↗



Access all drug discovery papers and probability of success in trials forecasts:

Access all drug discovery papers and probability of success in trials forecasts:

Drug Discovery Landscape

22 orphan drug designations for Ornithine transcarbamylase deficiency, including 2 approved therapies.

22 orphan drug designations for Ornithine transcarbamylase deficiency, including 2 approved therapies.

Drug

Therapy type

Regulator

Orphan designation

Approval

Sponsor

adeno-associated viral vector serotype LK03 containing the human ornithine transcarbamylase gene

gene therapies

FDA

2023-08-08

Bloomsbury Genetic Therapies Ltd.

A replication-deficient adeno-associated virus serotype 9 vector containing the ornithine transcarbamylase gene within the transposon and a lipid nanoparticle containing messenger RNA for the transposase

gene therapies

FDA

2023-07-24

Poseida Therapeutics, Inc.

Adeno-associated virus serotype rh79 containing the human OTC gene, adeno-associated virus serotype rh79 encoding a meganuclease for targeted editing of the human PCSK9 gene

gene therapies

EMA

2022-12-09

Pharma Gateway AB

non-replicating recombinant adeno-associated virus serotype rh79 (AAVrh.79) vectors: AAVrh79.TBG.M2PCSK9.WPRE.bGH and AAVrh79.hHDR.TBG.hOTCco.bGH

gene therapies

FDA

2022-09-01

iECURE, Inc.

mRNA encoding modified human ornithine transcarbamylase

RNAs

EMA

2022-07-18

Arcturus Therapeutics Europe B.V.

L-Citrulline

small molecules

FDA

2020-11-03

Orpha Labs, AG

Ornithine transcarbamylase messenger RNA

gene therapies

FDA

2019-06-26

Arcturus Therapeutics, Inc.

Sodium benzoate, sodium phenylacetate

small molecules

EMA

2019-04-24

Dipharma B.V.

Codon-optimised human ornithine transcarbamylase mRNA complexed with lipid-based nanoparticles

RNAs

EMA

2018-06-27

Transcrip Ireland Limited

Nanoparticle suspension containing biosynthetic codon-optimized human ornithine transcarbamylase messenger RNA

RNAs

FDA

2018-03-28

Translate Bio, Inc.

Modified messenger ribonucleic acid encoding human ornithine transcarbamylase enzyme encapsulated into lipid nanoparticles

RNAs

EMA

2017-04-20

PhaseRx Ireland, Ltd

Adeno-associated viral vector serotype LK03 encoding human ornithine transcarbamylase

gene therapies

EMA

2017-03-20

UCL Research Limited

mRNA encoding human ornithine transcarbamylase

RNAs

FDA

2016-11-23

PhaseRx, Inc.

Sodium benzoate

small molecules

EMA

2016-07-14

Lucane Pharma SA

Adeno-associated viral vector serotype 8 encoding human ornithine transcarbamylase

gene therapies

EMA

2016-03-21

Ultragenyx Germany GmbH

recombinant adeno-associated virus serotype AAV8 vector encoding human ornithine transcarbamylase

gene therapies

FDA

2015-12-29

Dimension Therapeutics

Sodium phenylbutyrate [Pheburane]

small molecules

EMA

2012-02-09

Lucane Pharma

Heterologous human adult liver-derived stem cells

cell therapies

EMA

2011-09-27

Unicyte S.R.L.

Glyceryl tri-(4-phenylbutyrate) [Ravicti]

small molecules

EMA

2010-06-10

2015-12-01

Immedica Pharma AB

Heterologous human adult liver derived stem cells

cell therapies

EMA

2008-02-04

Cellaion

Human heterologous liver cells (for infusion)

gene therapies

EMA

2007-09-14

Promethera Biosciences

Benzoate and phenylacetate [Ucephan]

small molecules

FDA

1986-01-21

1987-12-23

ImmunexImmunex

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New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.

Explority AI logo

228 Park Ave S,
New York, USA.

At Explority, we build first-of-its-kind AI to bring clarity to the earliest and riskiest stages of pharmaceutical research by forecasting which therapies are most likely to succeed. Explority AI web and mobile applications are properties of the Explority AI Inc., a company registered in the United States (File No. 10320493).
For all questions: support@explority.ai

Copyright © 2026 Explority AI Inc.